There is a button on the IOPs that allows for some timing signal to be broadcasted to the last DAC channel of DAC0 on that computer. I turned them off at about 5:57:40 utc. Might be interesting to check if it made any change in the 1 Hz comb.
I would suggest checking the IOP SDF files to make sure this is OFF by default. I am pretty sure that is true at LLO, but I am not positive